GgaEX0006385 @ galGal3
Exon Skipping
Gene
ENSGALG00000004664 | ZDHHC12
Description
NA
Coordinates
chr17:5868988-5870705:-
Coord C1 exon
chr17:5870429-5870705
Coord A exon
chr17:5870027-5870163
Coord C2 exon
chr17:5868988-5869074
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTACGGGGATGATCTTTCAGATC
3' ss Score
6.59
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
CGCAGGGCCGCAGTACCCGGGAAATGGGGCTGAGGGGCCGCGTAAGGCAGCGCGGTGTGAAGGGACGCGGCCCGGGCCCGAGCGCTAACGGAAGGAACAGAGGGAGCAGCCCGGGGCCGCGCGGAGGGGAGGGCCGAGGCGGGCGGGCCGCACCCCGCCTTCCAGCGCTGCTCCTTCCGGGCTCGCGGCGCCATGGGTGCCGGCGGGCTGTGGGTGAGGACCGCCCACACTGCCCTCAGCGGGGGCTTAACGCTGGGGCTCTTCCTGCACCGCACAG
Seq A exon
ATCTGCAGAAGGAAGCGGAGCGCGGTGCCGCGCTGCAGCCAACGCTCTTCGTAGCGCTGCTCGGGTGCTCCGTCCTGCTGTACTTCAGGGTGTCCCTCATGGACCCGGGCTTCGTTAGGGCTGAAGAGGAAGCAGAG
Seq C2 exon
GCAGACAAAAGTGAAGAGCAATGCACGTTGGTACCCCAGGTTTCAAGCAGTGTGAAGATGCGGCGTTGCGGCTACTGCATGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004664_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(12.9=45.7)
C2:
PF0152915=zf-DHHC=FE(17.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTAACGGAAGGAACAGAGG
R:
CCGCATCTTCACACTGCTTGA
Band lengths:
258-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]