RnoEX0100791 @ rn6
Exon Skipping
Gene
ENSRNOG00000015791 | Zdhhc12
Description
zinc finger, DHHC-type containing 12 [Source:RGD Symbol;Acc:1306593]
Coordinates
chr3:8657470-8659102:-
Coord C1 exon
chr3:8658985-8659102
Coord A exon
chr3:8657908-8658044
Coord C2 exon
chr3:8657470-8657547
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTCTGGCCTCCCCAGAGC
3' ss Score
9.56
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CGGGCGGGGGCCGAGGCCATGGCTCTCTGGCCGCTGCTCAACTCTGGGATGCTGGTGCGAACTGGGCACACCGTGCTGACCTGGGGAATCACGCTGGTGCTCTTCCTGCACGACACCG
Seq A exon
AGCTGCGTCAATGGGAAGAGCAAGGGGAACTGTTCCTGCCCCTCACTTTCCTGCTCCTGGTGCTGGGCTCGCTGCTGCTCTATCTGGCTGTGTCACTCATGGACCCCGGCTATGTGACTGCTCAGCCCCAGCCTCAG
Seq C2 exon
GAGGAGCCGAAGGAGGAACAGACAGCCATGGTTCCTCAGGCTATCCCACTTCGACGCTGCAGATACTGCCTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015791_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.269
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(13.0=45.7)
C2:
PF0152915=zf-DHHC=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATGGCTCTCTGGC
R:
GTATCTGCAGCGTCGAAGTGG
Band lengths:
171-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]