DreEX6047941 @ danRer10
Exon Skipping
Gene
ENSDARG00000076632 | zdhhc12a
Description
zinc finger, DHHC-type containing 12a [Source:ZFIN;Acc:ZDB-GENE-081104-40]
Coordinates
chr8:2539883-2544029:-
Coord C1 exon
chr8:2543837-2544029
Coord A exon
chr8:2541956-2542092
Coord C2 exon
chr8:2539883-2539978
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTGTTTGTGTGCAGATC
3' ss Score
10.67
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
TGTTTTTAATTAACCGGACAGTAGTGCTCGTATATTCAGTGTAGATATGATTTGGTTGTTTTTTTAAGTGTTTATAAGTACAATAACGTAGTTAAGATGAATAAAAGCTTGTTTAAATCGGGTTGTTTAGTGCGAACAGCTCATGTTATTCTGACCTGGATAATTACTTTAATCCTGTTTCTGCACAACACAG
Seq A exon
ATCTGCGCAGGTGTCAGGAGAGAGGAGATCTGCTGCAGCCACTCGTCTTCAGCTCTGTGCTTCTGCTCTCGGTGCTGCTTTACTTCACCGTGTCTCTGATGGATCCTGGTTTTGTTCTGTCCGACAGTCAAACAGAG
Seq C2 exon
ACAGCATCAGGGGATGGTGATGAAGAACTGGAAGCGATGATTCCTCAAGAGCAGAACTCTATAAAGCAGAGACGCTGTGGATACTGCTTTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076632-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(12.6=45.7)
C2:
PF0152915=zf-DHHC=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCGGACAGTAGTGCTCGT
R:
GAGTTCTGCTCTTGAGGAATCA
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]