HsaEX0072439 @ hg38
Exon Skipping
Gene
ENSG00000160446 | ZDHHC12
Description
zinc finger DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
Coordinates
chr9:128722009-128724109:-
Coord C1 exon
chr9:128723994-128724109
Coord A exon
chr9:128722438-128722574
Coord C2 exon
chr9:128722009-128722086
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTCCGGCCTCTCCAGAGC
3' ss Score
7.37
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GCCCCGGGCCGAGGCGATGGCGCCCTGGGCGCTCCTCAGCCCTGGGGTCCTGGTGCGGACCGGGCACACCGTGCTGACCTGGGGAATCACGCTGGTGCTCTTCCTGCACGATACCG
Seq A exon
AGCTGCGGCAATGGGAGGAGCAGGGGGAGCTGCTCCTGCCCCTCACCTTCCTGCTCCTGGTGCTGGGCTCCCTGCTGCTCTACCTCGCTGTGTCACTCATGGACCCTGGCTACGTGAATGTGCAGCCCCAGCCTCAG
Seq C2 exon
GAGGAGCTCAAAGAGGAGCAGACAGCCATGGTTCCTCCAGCCATCCCTCTTCGGCGCTGCAGATACTGCCTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160446_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(13.0=45.7)
C2:
PF0152915=zf-DHHC=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCCTGGGGTCCTG
R:
GTATCTGCAGCGCCGAAGAG
Band lengths:
148-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development