MmuEX6100187 @ mm10
Exon Skipping
Gene
ENSMUSG00000015335 | Zdhhc12
Description
zinc finger, DHHC domain containing 12 [Source:MGI Symbol;Acc:MGI:1913470]
Coordinates
chr2:30091988-30093648:-
Coord C1 exon
chr2:30093489-30093648
Coord A exon
chr2:30092405-30092541
Coord C2 exon
chr2:30091988-30092065
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTCTGGCCTCCCCAGAGC
3' ss Score
9.56
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCCCCGCGGCCCCACCTTCTGCGCGCTTCTTCCGGGTGGGCTCGGGCGGGGGCCAAGGCCATGGCTCTTTGGCCGCCGCTTAACTCTGGGATGCTGGTGCGGACTGGGCACACCGTGCTGACCTGGGGAATCACTCTGGTGCTCTTCCTGCACGACACCG
Seq A exon
AGCTACGCCAATGGGAAGAGCAAGGGGAGCTGCTCCTGCCCCTCACATTCCTGCTCCTGGTGCTAAGCTCCCTGCTGCTTTATCTGGCTGTGTCACTCATGGACCCCGGCTATGTGACTACTCAGCCCCAGCCTCAG
Seq C2 exon
GGCGAGCCCAAGGAGGAACAGGCAGCCATGGTTCCTCAGGCCGTCCCACTCCGGCGCTGCAGACACTGTCTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015335-'0-5,'0-2,7-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.141 C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(13.0=45.7)
C2:
PF0152915=zf-DHHC=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTCTGCGCGCTTCTTC
R:
GACAGTGTCTGCAGCGCC
Band lengths:
218-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types