HsaEX0072439 @ hg19
Exon Skipping
Gene
ENSG00000160446 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:19159]
Coordinates
chr9:131484288-131486385:-
Coord C1 exon
chr9:131486273-131486385
Coord A exon
chr9:131484717-131484853
Coord C2 exon
chr9:131484288-131484365
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTCCGGCCTCTCCAGAGC
3' ss Score
7.37
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
CCGGGCCGAGGCGATGGCGCCCTGGGCGCTCCTCAGCCCTGGGGTCCTGGTGCGGACCGGGCACACCGTGCTGACCTGGGGAATCACGCTGGTGCTCTTCCTGCACGATACCG
Seq A exon
AGCTGCGGCAATGGGAGGAGCAGGGGGAGCTGCTCCTGCCCCTCACCTTCCTGCTCCTGGTGCTGGGCTCCCTGCTGCTCTACCTCGCTGTGTCACTCATGGACCCTGGCTACGTGAATGTGCAGCCCCAGCCTCAG
Seq C2 exon
GAGGAGCTCAAAGAGGAGCAGACAGCCATGGTTCCTCCAGCCATCCCTCTTCGGCGCTGCAGATACTGCCTGGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160446-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(15.1=45.7)
C2:
PF0152915=zf-DHHC=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCCTGGGGTCCTG
R:
GTATCTGCAGCGCCGAAGAG
Band lengths:
148-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)