DreEX0086920 @ danRer10
Exon Skipping
Gene
ENSDARG00000008553 | zgc:136872
Description
zgc:136872 [Source:ZFIN;Acc:ZDB-GENE-060421-5204]
Coordinates
chr17:3063010-3068056:+
Coord C1 exon
chr17:3063010-3063128
Coord A exon
chr17:3063661-3063794
Coord C2 exon
chr17:3067882-3068056
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGTTATGTTTTTGTTTTCAGTTC
3' ss Score
10.64
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGAACTGCTGGTTTCTGGCATCTGTCGGAGCGCTTACATTTCAGAAGCGCATCATGAAGCAGGTCATTCAGGACGATCAAACGTTCTCTGTGGATTATGCTGGAATATTTCACTTTAGG
Seq A exon
TTCTGGAGATTTGGATCATGGGTTGATGTGGTTATCGATGATAAACTGCCAACTATAGACAACCAACTTGTCTTTGTCCAGTCCAAAACACCGAATGAATTCTGGCCTGCTCTGTTAGAGAAAGCTTATGCCAA
Seq C2 exon
AGTGTGTGGCTCTTATGCGGATATGGACGCAGGGAACATCTCAGAGGCTCTGATGGATTTCACCGGTGGTCCACACATGACCATTAAACTGAGTCAAGCGTCAGATAAGCTGTGGGACATCATGAGACGAGCCGGCAAATCAGAATCACTGATGGGATGCGGCACTCCTGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008553-'5-6,'5-4,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.1=100)
A:
PF0064816=Peptidase_C2=FE(14.8=100)
C2:
PF0064816=Peptidase_C2=FE(19.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGTTTCTGGCATCTGT
R:
CGTCTCATGATGTCCCACAGC
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]