DreEX0088291 @ danRer10
Exon Skipping
Gene
ENSDARG00000014680 | znf710a
Description
zinc finger protein 710a [Source:ZFIN;Acc:ZDB-GENE-030131-5559]
Coordinates
chr18:26107473-26110160:+
Coord C1 exon
chr18:26107473-26107664
Coord A exon
chr18:26107791-26107965
Coord C2 exon
chr18:26109731-26110160
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTCCAAACTTGTTCCCGTAGGTG
3' ss Score
9.67
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGTATGAAGGAATACAAATGTGACGTCTGTTCTCGTGAGTTCACCCTCTCTGCCAACCTGAAGCGACACATGCTGATTCACACCAGTGTGCGCCCTTTCCAGTGCCATGTCTGCTTCAAGACCTTTGTTCAGAAACAGACACTTAAAACGCACATGATTGTCCACTTGCCTGTGAAACCTTTTAAGTGCAAG
Seq A exon
GTGTGTGGGAAGTCCTTCAACAGAATGTATAACCTGCTGGGTCACATGCACCTTCATGCCGGTAGCAAACCCTTCAAGTGCCCTTACTGCACCAGCAAGTTCAATTTGAAGGGTAACTTGAGTCGACACATGAAGGTGAAACATGGAATCCTGGACACCTCAAATGAAGGACAAG
Seq C2 exon
ACACCCAGCCTGATGCGGAGAGTCAGGAAGATTACGAGGAAGAGAGCTTTGATTACAGCGAGAGGGAAAATCTAGCGAGCAACAACGCACAAGATATGGCCAAACTAGCCAAAATTAGCTACTACAACTACACCAAGGTTCCTGCTCGCTACAACACATCGTAAGCAGCTGACTGAGACACTATGTGGTTTAAGGCTGGGGAAAAGGACTAACGGTCATTTATGTAGTACTCTTGGCTCTGAAGTGAGCCACTGAGGATATAGCCATCATGAAGTGGATGTGCACTGGAAGCCATTTTGGCTCTGAGAAACAAAAGTGACAGCGGATTCATTTTAACAATGTCATTTTACATAAGGGATCATCTTGAAGTATTTTTTCTGTTTTTAAAGCCCATGTTCCTTTATTTGGACCATCTTAAAATGCAGTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014680-'7-5,'7-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.220 C2=0.426
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACTTGCCTGTGAAACC
R:
CGTTAGTCCTTTTCCCCAGCC
Band lengths:
248-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]