MmuEX0053575 @ mm10
Exon Skipping
Gene
ENSMUSG00000048897 | Zfp710
Description
zinc finger protein 710 [Source:MGI Symbol;Acc:MGI:1921747]
Coordinates
chr7:80085951-80094173:+
Coord C1 exon
chr7:80085951-80086142
Coord A exon
chr7:80086434-80086608
Coord C2 exon
chr7:80090335-80094173
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGGTACCCTCCCTGTTCCAGGTG
3' ss Score
10.85
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGGCCGGGAGTTCACGCTGCAGGCCAACATGAAGCGCCACATGCTGATCCACACCAGCGTCCGGCCCTACCAGTGCCACATCTGCTTCAAGACCTTCGTGCAGAAGCAAACCCTCAAGACCCACATGATTGTGCACTCGCCTGTGAAGCCGTTCAAGTGCAAG
Seq A exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
Seq C2 exon
ACCCCATGATGGAGCTGGCAGGCCCTGACCCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTACACCTACAGCAGTGTGGACAGCAGCGCGGAGGCCAGCACCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCAGGCCGCTGAGTGGGCGGGGAGGGCGCAGGGTGAGACCCACATACTGAGGGCTGCCCCTCTGCAGCCCAGAACCAAGCTACTGCCCACTGCCTGGCCCTCCTCCCCCCCAACCCTCAAATCATTTGCACCACTAGGGATCTTTAGACCAAATGGAGACTCTACTACTGTCCTTGCAGGGAGCTGGCCACAGGCCTAGGCATCCCGGTGAGGGAAAGGTAACCAGGAGGTCCGCATCTGGTTCTCCTTGGCCTGCTGCTGTGCGTGGGCAGGGGGAATGCCAGTGAGGCCTCTTACAGGCACAGACTTAGAGGTCTTCCCCAAGCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048897_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.356
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(56.0=21.9),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCCACATCTGCTTCAA
R:
CCATCTCTTTCATGGCCTGCT
Band lengths:
244-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types