RnoEX0101675 @ rn6
Exon Skipping
Gene
ENSRNOG00000014278 | Zfp710
Description
zinc finger protein 710 [Source:RGD Symbol;Acc:1306491]
Coordinates
chr1:141865600-141870325:+
Coord C1 exon
chr1:141865600-141865791
Coord A exon
chr1:141866106-141866280
Coord C2 exon
chr1:141869958-141870325
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGGTACCCTTCCTGTTCCAGGTG
3' ss Score
11.55
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGGCCGGGAGTTCACCCTGCAGGCCAACATGAAGCGCCACATGCTCATCCACACCAGCGTGCGGCCCTACCAGTGCCACATCTGCTTCAAGACCTTTGTGCAGAAGCAAACCCTCAAGACCCACATGATCGTGCACTCGCCTGTGAAGCCGTTCAAGTGCAAG
Seq A exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG
Seq C2 exon
ACCCCATGATGGAGCTGGCAGGCCCCGACCCCTCTGAACTTGACAACCATCAGGAGATGGAGGACTTCGAGGAAAACGCCTACACCTACAGCAGTGTGGACGGCAGCACGGAGGCCAGCGCCCTCACTGAGCAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCGGGCTGCTGAGTGGGGGAGGGGGGGGCGCAGGGTGAGACCCACCTACTGAGGGCTGCACCTGTGCAGTCCAGAACCAAGCTACTGCCCACTGCCCAGCCCCCCTCCCCCCCACCCTCAGTCACTTGCACCACTAGGGACCTTTAGACCAAATGGAGACTGTACTACTGTCCTTGCAGGGAGCTGGGCGCAGGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014278-'19-8,'19-5,20-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.379
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(56.0=21.9),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGCCGTTCAAGTGCAA
R:
CCCTCAGTAGGTGGGTCTCAC
Band lengths:
246-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]