HsaEX0074243 @ hg38
Exon Skipping
Gene
ENSG00000140548 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:HGNC:25352]
Coordinates
chr15:90073071-90082200:+
Coord C1 exon
chr15:90073071-90073135
Coord A exon
chr15:90074116-90074290
Coord C2 exon
chr15:90079660-90082200
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACCGGGTTGATGTGTTCTAGGTG
3' ss Score
8.62
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GGCGTGAAGGAGTTCAAGTGCGAGGTGTGTGGCCGGGAGTTCACCCTACAGGCGAACATGAAGCG
Seq A exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACGCCGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTTAATCTCAAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTCATGGACATCGGCCTGGACAGCCAAG
Seq C2 exon
ACCCCATGATGGAGCTGACAGGCACTGACCCTTCAGAGCTCGACGGCCAGCAGGAGATGGAGGACTTCGAGGAGAACGCCTACAGCTATGCGAGCGTGGACAGCAGCGCCGAGGCCAGTGTCCTCACTGAACAGGCCATGAAAGAGATGGCCTACTACAATGTGCTATAGCGCAAGCTGGGCCACCCCTAACGGGGGCCGGGGGCGAGGGCATGGGGGTGAGACCCATGGGCTGCAGGCTGCACCTCCTGCAGCCGAGAAACAAGCTACTGCCCCACTGTTCTGAGCCCTCCCTCCCCGAGTCATTTGCACCACTAGGGACCTTTAGACCAAATGGAGACTGTACTACTGGCCCCGGCTGTGAGCCAGCACAGGCCCAGGCATCCCAGCAAGGGAAGGAGAACACGCGAGGCCCAGATCTGGGTCTCCCTGGCCTGCTTCCGTGGGGAGTGGGAGAAGTGGGGCCACTGGGGACAGGTCACAAGGGCACCGGCCCTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140548_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.055 C2=0.304
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(56.0=21.9),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAAGGAGTTCAAGTGCGA
R:
CCAGCTTGCGCTATAGCACAT
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development