DreEX6000527 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4605698-4610389:-
Coord C1 exon
chr4:4610353-4610389
Coord A exon
chr4:4610167-4610266
Coord C2 exon
chr4:4605698-4606995
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTCATTTGTCTTGTTTTCAGAGG
3' ss Score
8.31
5' ss Seq
CTGGTCAGA
5' ss Score
3.96
Exon sequences
Seq C1 exon
GGTCAAAGCTGATGTTGGATTTAACAGAGCGAGACAC
Seq A exon
AGGTGACACAGCATTGCACAAAGCGGCGGCACAACAACAGCGTGATGTTTGCAAACGTCTGCTTGAAGCCGGAGCTTCCCCCCACAAAACCAACTTCCTG
Seq C2 exon
GGGAAAACACCTAAGGATTGTGCCCTGGATGCCGGGAATTTAGAGTTGGCGTCCATGCTGGAGATCCAGGCGGTGGATGAACCAGCATCACACGAGGATCTGGAGACGGCAGTATGAACGGCTCACCCCATGACGTGGCAGGAAGAATTTTTACCCACAGAAAGTGGCTGTTAGCACTCCTCGAGCGTCTGCTTGCACTCGCAGAGAAGCCGACGATAGCAGACAAGAGAAGTGCAACGAGATTGCCTCGGGCTCAGAAAAAAAAACCTCACCGAGCAGGAACGTGTCTAGCTGTTGTTTTTCGACTCATGTCGCTGTGGGGTTTTTTTAATCGTAGGGTCTGACCTAGCATTTATTTATTGCTCTTATTTATTATAGCTATTTATTCAAAGGCGGATTGCTGCATTGCGTGTAGAGAGACGTTGCCAGAAAAAAGCACGTCACATTCGTGTGCCAAAGACGCACAGGAGAAAGAGGCTCGGAGATTTTGAAAACCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-'35-44,'35-42,36-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.353 C2=0.263
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(7.2=53.8),PF127962=Ank_2=PU(14.7=76.9)
A:
PF127962=Ank_2=FE(48.5=100)
C2:
PF127962=Ank_2=PD(33.8=59.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGTTGGATTTAACAGAGCG
R:
TCTGCTATCGTCGGCTTCTCT
Band lengths:
253-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]