BtaEX6028855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019980 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:101862571-101869657:-
Coord C1 exon
chr4:101869621-101869657
Coord A exon
chr4:101867795-101867894
Coord C2 exon
chr4:101862571-101863016
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCATTTCATCTTTGATTTAGGGG
3' ss Score
8.31
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GACCGTCCGAGTTATTGGATATGGCAGACAGTGAAAC
Seq A exon
GGGTGAGACCGCACTGCACAAGGCAGCCTGCCAGCGGAACCGGGCCGTGTGCCAGCTTCTGGTGGACGCAGGAGCATCTCTGAGAAAGACGGACTCCAAG
Seq C2 exon
GGTAAGACACCTCAAGACAGAGCCCAACAGGCCGGGGACCCAGACTTGGCTGCCTACCTGGAAAGCCGCCAGAATTATAAGATCATTGGCCATGAGGACCTGGAAACTGCTGTTTGACCCTGGTAGACAGGCTGAGAGAACCTCAACAAGCATCTCACCTGTGCCCTCCTGGCGATCGGGCGGCTCCCCTGGAAGAAGCTGATGGAATCCATAAATCTGTCTCTCCTGCAAGAATCTATCTGAGACCATGCCACCAGTTTTAAGGGCTACCAAGATGTACCACAGAACATGATAGCCCACTGAGGATGAGGCAGGATACCTGGAGATTTGTGGACTGCGAGTTCCACAAAATTCGATCCTTATTGCTTCCAGCAAGTAGCATGAACTTCTGTGTTCACCTGTATAATTTATTTTAAAGATCCAAGGATGTTCGTATAAATGGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019980-'43-40,'43-39,44-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.294 C2=0.447
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(12.8=100)
A:
PF127962=Ank_2=FE(35.1=100)
C2:
PF127962=Ank_2=PD(29.8=71.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCCGAGTTATTGGATATGGC
R:
TTCCATCAGCTTCTTCCAGGG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]