GgaEX6002515 @ galGal3
Exon Skipping
Gene
ENSGALG00000012890 | DGKI
Description
NA
Coordinates
chr1:59714932-59719058:+
Coord C1 exon
chr1:59714932-59714968
Coord A exon
chr1:59717107-59717206
Coord C2 exon
chr1:59718656-59719058
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGTACTTTGGTCTAGGGG
3' ss Score
7.83
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
GTCCATCTGAATTACTGGACATGACAGACAGTGAAAC
Seq A exon
GGGTGAGACAGCATTACATAAAGCGGCCTGCCAACGCCATCGTGCCATCTGCCAGCTCCTGGTGGATGCGGGAGCCTCGCTGAGAAAGACGGACTCCAAG
Seq C2 exon
GGTAAGACTCCTCGTGACAGGGCTCAGCAAGCTGGTGATCCAGATCTGGCCTCATATCTGGAGAGTCGACAGAATTACCAAATGGTTCCCCATGAGGATTTGGAAACAGCAGTCTGATGTCTGAAAACAGAGAAGAGGATCTTCAGAAACAGCAAGGCTGCACCTGAGCACTTGGGCATCGTGTGAGGAAGAAGCTGATGGAATCAACATGTCTCTCGCTCTCGTGGAAAATATCAGAGGACATGCCACCAGTTTCTAAGGGCTACAGAGTCTTGCCACGGAACAGTTAGGTTCCATAGGTTAGCCCATGATGGAGGAGGTGGGACACTCAAAGGTCTGTGGAATCCACGGGCCACGGAAATTTACCTTAATTGCTTCCAGCAAGTAGCATGAACTTCTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012890-'35-35,'35-34,36-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.294 C2=1.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(13.0=100)
A:
PF127962=Ank_2=FE(35.9=100)
C2:
PF127962=Ank_2=PD(28.3=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACATGACAGACAGTGA
R:
TTCCACGAGAGCGAGAGACAT
Band lengths:
253-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]