MmuEX6003736 @ mm10
Exon Skipping
Gene
ENSMUSG00000038665 | Dgki
Description
diacylglycerol kinase, iota [Source:MGI Symbol;Acc:MGI:2443430]
Coordinates
chr6:36846022-36852552:-
Coord C1 exon
chr6:36852516-36852552
Coord A exon
chr6:36850862-36850961
Coord C2 exon
chr6:36846022-36847492
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTCTTAATCTTTGATTTAGGGG
3' ss Score
8.79
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GACCTGCAGAATTACTGGATATGGCAGACAGTGAAAC
Seq A exon
GGGCGAGACTGCACTGCACAAGGCTGCCTGCCAAAGGAACCGGGCTGTATGCCAGCTTCTGGTGGATGCAGGAGCATCTCTGAGACAGACAGACTCCAAG
Seq C2 exon
GGCAAGACACCCCAGGAACGAGCACAGCAGGCCGGGGACCCAGATTTGGCTGCTTACCTAGAAAGCCGACAGAACTATAAGATCATTGGCCATGAAGACCTGGAAACTGCTGTTTGACTGTGGTAGACAGGCAAGAAGAACTTGAGCAAGCGTATCACCTACGCCCTCCCAGCCACTGGGCAGCTCCCCTGGAAGAAGCTAATGGAATCCATATTTGCCTCTCCTGCAAGGATCTATCTGAGAATATGCTACCAGGTTTCAAGGGCTACAGGGATGTACAACAGGACACGATAGCCCATTGAGAAGGAGGCAGGCTACCGGAGATTTGTGGCGTACACGGTCCACAAAATTTGATCCTTATTGCTTCTAGCAAGTAGCATGAACTTCTGTGTTCATCCGTCTAATTTATTTTAAAGATTCTGAGGAGTTTCACGTAAAGGGCACTGCTCCCTCCTCCCTTTAGACATTCACCCTTCCCCTGTACCTCACGATTCTACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038665_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.294 C2=0.447
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(12.8=100)
A:
PF127962=Ank_2=FE(35.1=100)
C2:
PF127962=Ank_2=PD(29.8=71.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATATGGCAGACAGTGA
R:
TGCAGGAGAGGCAAATATGGA
Band lengths:
252-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types