HsaEX0019444 @ hg19
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:2855]
Coordinates
chr7:137073563-137082159:-
Coord C1 exon
chr7:137082123-137082159
Coord A exon
chr7:137080344-137080443
Coord C2 exon
chr7:137073563-137076082
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCATTTCATCTTTGATTTAGGGG
3' ss Score
8.31
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GACCTTCCGAGTTATTGGATATGGCAGACAGTGAAAC
Seq A exon
GGGTGAGACTGCACTGCACAAGGCTGCCTGCCAGCGGAACCGGGCTGTGTGCCAGCTTCTGGTGGATGCAGGAGCATCTCTGAGAAAGACGGACTCCAAG
Seq C2 exon
GGTAAGACACCTCAAGAAAGAGCACAGCAGGCTGGGGACCCAGACTTGGCTGCTTACCTAGAAAGCCGTCAGAACTATAAGGTCATTGGCCATGAGGACCTGGAAACTGCTGTTTGACCCTGGTATTCGGGCAAAGAGGACATGAGCAAGCGTATCACATCTGCCCTCCCTGCAATTGGGCAGCTCCCCTGGAAGAAGCTGATGGAATTCATATATCTGTCTCTCTCCTGCAAGAATCTACCTGAGACCATGCCACTAGCTTTTAAGGGCTACCAAGATGTACAACAGAACATGATAGCCCATTGAGAAGGAGGCAGGATACCTGGAGATTTGTGGAATACAGTACGAGTTCCACAAAATTTGATCCTTATTGCTTCCAGCAAGTAGCATGAACTTCTGTGTTCACCTGTATAATTTATTTTAAAGATTCAAAGGATGTTCGTATAAATGGCACTGCTCCATCCTCCCCCTATGCATTGGTTTTTTTCCCTGTACCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-'48-50,'48-49,49-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.272 C2=0.447
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(12.8=100)
A:
PF127962=Ank_2=FE(35.1=100)
C2:
PF127962=Ank_2=PD(29.8=71.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCGAGTTATTGGATATGGC
R:
TCCATCAGCTTCTTCCAGGGG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)