HsaEX0019444 @ hg38
Exon Skipping
Gene
ENSG00000157680 | DGKI
Description
diacylglycerol kinase iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr7:137381037-137397413:-
Coord C1 exon
chr7:137397377-137397413
Coord A exon
chr7:137395598-137395697
Coord C2 exon
chr7:137381037-137391336
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCATTTCATCTTTGATTTAGGGG
3' ss Score
8.31
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GACCTTCCGAGTTATTGGATATGGCAGACAGTGAAAC
Seq A exon
GGGTGAGACTGCACTGCACAAGGCTGCCTGCCAGCGGAACCGGGCTGTGTGCCAGCTTCTGGTGGATGCAGGAGCATCTCTGAGAAAGACGGACTCCAAG
Seq C2 exon
GGTAAGACACCTCAAGAAAGAGCACAGCAGGCTGGGGACCCAGACTTGGCTGCTTACCTAGAAAGCCGTCAGAACTATAAGGTCATTGGCCATGAGGACCTGGAAACTGCTGTTTGACCCTGGTATTCGGGCAAAGAGGACATGAGCAAGCGTATCACATCTGCCCTCCCTGCAATTGGGCAGCTCCCCTGGAAGAAGCTGATGGAATTCATATATCTGTCTCTCTCCTGCAAGAATCTACCTGAGACCATGCCACTAGCTTTTAAGGGCTACCAAGATGTACAACAGAACATGATAGCCCATTGAGAAGGAGGCAGGATACCTGGAGATTTGTGGAATACAGTACGAGTTCCACAAAATTTGATCCTTATTGCTTCCAGCAAGTAGCATGAACTTCTGTGTTCACCTGTATAATTTATTTTAAAGATTCAAAGGATGTTCGTATAAATGGCACTGCTCCATCCTCCCCCTATGCATTGGTTTTTTTCCCTGTACCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157680-'86-78,'86-77,87-78
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.484 A=0.269 C2=0.447
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(12.8=100)
A:
PF127962=Ank_2=FE(35.1=100)
C2:
PF127962=Ank_2=PD(29.8=71.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCGAGTTATTGGATATGGC
R:
TCCATCAGCTTCTTCCAGGGG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development