RnoEX0027524 @ rn6
Exon Skipping
Gene
ENSRNOG00000026705 | Dgki
Description
diacylglycerol kinase, iota [Source:RGD Symbol;Acc:735049]
Coordinates
chr4:64374342-64380021:-
Coord C1 exon
chr4:64379985-64380021
Coord A exon
chr4:64378299-64378398
Coord C2 exon
chr4:64374342-64374962
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTCTTAATCTTTGATTTAGGGG
3' ss Score
8.79
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GACCTGCGGAATTACTGGACATGGCAGACAGTGAAAC
Seq A exon
GGGTGAGACTGCACTGCACAAGGCCGCCTGCCAAAGGAACCGGGCTGTATGCCAGCTTCTGGTGGACGCAGGAGCATCTCTGAGACAGACAGACTCCAAG
Seq C2 exon
GGAAAGACACCCCAAGAGCGAGCACAGCAGGCTGGGGACCCGGATTTGGCTGCTTACCTAGAAAGCCGACAGAACTATAAGATCATTGGCCACGAAGACCTGGAAACTGCTGTTTGACCCTGGTAGACAGTCAAGAAGAACTTGATCAAGCGTATCACCTGGTGCGCCCTCCCAGCCACTGGGCAGCTCCCCTGGAAGAAGCTAACGGAATCCATATCCGCCTCTCTCCCGCAAGGCTCTCTCTGAGAAAATGCTATCAGGTTTTAAGGGCTACGGGGATGTACAACAGGACATGATAGCCCATTGAGAAGGGGGCAGGCTACCGGAGATTTGTGGAGTACACGTTCCACAAAATCTGATCCTTATTGCTTCCAGCAAGTAGCATGGACTTCTGTGTTCACCCCTCTAATTTATTTTAAAGATTCTGAAGATTTTCACTGCTCCCCCCTCCCTCTTGGCATCCATCTCTCCCCTGTACCTCATAACTCTACTGTAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026705-'51-54,'51-52,52-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=0.250 C2=0.405
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(12.8=100)
A:
PF127962=Ank_2=FE(35.1=100)
C2:
PF127962=Ank_2=PD(29.8=71.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAATTACTGGACATGGCA
R:
AGAGGCGGATATGGATTCCGT
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]