DreEX6000657 @ danRer10
Exon Skipping
Gene
ENSDARG00000045837 | SSC5D (2 of 2)
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr4:5481192-5484217:+
Coord C1 exon
chr4:5481192-5481500
Coord A exon
chr4:5483439-5483747
Coord C2 exon
chr4:5484110-5484217
Length
309 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTAAATGTCTGTTAGCCA
3' ss Score
3.88
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTCCTGTCTTATTGGTTAATGGCACTAATCCATGTTCTGGACGAGTGGAGGTTCGATTCAATGGTGTGTACGGAACAGTGTGTGATGATGGCTGGAATCTGACAGACGCTGCAGTGGTGTGTAGAGCGACGGGCTGTGGAGATGCTTTGGCAACAAACAGAGCTGCTTATTTTGAGAATTACTCAGGAAAAGTATGGATGAACAATGTGAGCTGTAACGGGAAAGAGTCTACACTGCCGGAGTGTGCATATACTGGAACAATTCCACAGAACTGCAGTCATGAAATGGATGCTGGGGTTACCTGTGGCC
Seq A exon
CCAAACTTCGTCTGCAGAACGGTTCAAGCTCATGTTCTGGACGAGTGGAGGTTCTTCATAACGGAACCTGGGGAACAGTGTGTGATGATGGCTGGGACCTACAAGATGCTAAAGTGGTATGTGGAGAAATTGGCTGTGGAAATGCTAAAGAGGCCAAAAATGGGGCTTTTTTTGGGAAAGGCTCGGGACCCGTATGGATGAATAATCTGAACTGTAATGGGAACGAGATCACTCTAAAGAGATGCAGATCAAGTGGATGGGACGTACAGAACTGTGATCATTCTAAAGATGCTGGAGTCATCTGCCAAA
Seq C2 exon
ATGACAGTTCGTCTTCAACAACTGCAAAGTCAAGCTCAACAACAAAAGTGACGTCTACATCTGCTGCGCACACCACCAGCTCTCTAACAGACATCTCTTCAATCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045837-'45-49,'45-48,47-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.243
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=94.2)
A:
PF0053013=SRCR=WD(100=94.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTGGACGAGTGGAGGTT
R:
CGCAGCAGATGTAGACGTCAC
Band lengths:
345-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]