DreEX6002522 @ danRer10
Exon Skipping
Gene
ENSDARG00000026855 | cacna2d4a
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4a [Source:ZFIN;Acc:ZDB-GENE-041210-213]
Coordinates
chr4:20551153-20551854:-
Coord C1 exon
chr4:20551757-20551854
Coord A exon
chr4:20551340-20551433
Coord C2 exon
chr4:20551153-20551245
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTGTCTATTCTTAAGGTG
3' ss Score
7.66
5' ss Seq
CGGGTACCA
5' ss Score
3.25
Exon sequences
Seq C1 exon
GACATACTGTGAGACAGACATCGATCCACATCATCGCAAATTGACGCAGCTTCAGGCCGTGGTTCGGTATTTAACAGGAAAAGAACCAGATCTGGAAT
Seq A exon
GTGATGAAAGGCTTCTGCAGCAGACTCTGTTTGACGCAGTGGTCACAGCTCCTATGGAAGCCTATTGGACTGCACTGCTGCTCAACGCCTCCGG
Seq C2 exon
TATTGATGGGGGAGTGGAGACAGCGTTCCTGGGCACGCGCTCTGGCCTCATGAGGATGATCAGATATGCTGGCGTAGAGAAGCGTGTGGCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026855-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGATCCACATCATCGCA
R:
ACGCTTCTCTACGCCAGCATA
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]