RnoEX6014842 @ rn6
Exon Skipping
Gene
ENSRNOG00000008031 | Cacna2d4
Description
calcium voltage-gated channel auxiliary subunit alpha2delta 4 [Source:RGD Symbol;Acc:1562038]
Coordinates
chr4:151363399-151367935:+
Coord C1 exon
chr4:151363399-151363435
Coord A exon
chr4:151363437-151363492
Coord C2 exon
chr4:151367840-151367935
Length
56 bp
Sequences
Splice sites
3' ss Seq
GGAGGTGCTGTTTGACTCATGTG
3' ss Score
-4.49
5' ss Seq
CGAGTATGT
5' ss Score
6.61
Exon sequences
Seq C1 exon
TGATGAGGAGCTGGTGCGGGAGGTGCTGTTTGACTCA
Seq A exon
GTGGTGTCCGCACCCATGGAAGCCTACTGGACAGCACTGGCGCTCAACATCTCCGA
Seq C2 exon
AGAGTCAGAGCCTGGTGTGGAAGTGGCCTTTCTGGGGACCCGGGCTGGCCTTCTAAGAAGAAGCTTGTTCGTAGGCTCCGAGAAGGTCTCTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008031-'28-35,'28-34,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGGAGCTGGTGCGG
R:
GACCTTCTCGGAGCCTACGAA
Band lengths:
125-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]