BtaEX6024845 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021994 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr5:108765585-108772309:-
Coord C1 exon
chr5:108772212-108772309
Coord A exon
chr5:108770761-108770854
Coord C2 exon
chr5:108765585-108765680
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTGTCCGGACTTTGCCCCAGGTG
3' ss Score
7.85
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GATCTACTGCATCACGGACATCGACCCAGAGCACCGCAAGCTGAGCCAGCTGGAGGCTGTGGTACGCTTCCTGACCCAGGAGGACCCCGCCCTGGAGT
Seq A exon
GTGACGAGGAGCTGCTGCAGGAGGCGCTGTTTGACGCGGTGGTCACGGCCCCCATGGAGGCATACTGGACGGCACTGGCCCTCAACAGCTCCGA
Seq C2 exon
CGAGTCCGAGCAAGTGGTGGACATGGCCTTCCTGGGCACCCGGGCTGGCCTCCTCAGAAGCAGCTTGTTCGTGGGCTCCGAGAAGGTCTCTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021994-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCATCACGGACATCGAC
R:
CCACGAACAAGCTGCTTCTGA
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]