DreEX6102119 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18953538-18957376:-
Coord C1 exon
chr25:18957279-18957376
Coord A exon
chr25:18953772-18953865
Coord C2 exon
chr25:18953538-18953630
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTATCCTTGCAATAGGTG
3' ss Score
8.29
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GACATATTGTGAGACAGATATTGACCCGCAGCACCGTAAACTCAATCAACTTCAAGCTGTGGTTCGATACCTGACTGGAAAAGAGCCCGAATTGGAGT
Seq A exon
GTGATGAGATACTGCTCCAGCAGGTCCTGTTTGATGCAGTGGTAACCGCTCCACTTGAGGCCTACTGGACAAGGCTAACGCTAACCCCTCCTGG
Seq C2 exon
TGTGGATGAAGGCATGGAGTCGGCTTTCCTTGGGACACGCTCTGGAGTCTTGCGTGTCATCAGATATACAGGAATTGAAAAACGATTGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATATTGACCCGCAGCAC
R:
TCCCAATCGTTTTTCAATTCCTGT
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]