MmuEX6006550 @ mm10
Exon Skipping
Gene
ENSMUSG00000041460 | Cacna2d4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:MGI Symbol;Acc:MGI:2442632]
Coordinates
chr6:119300328-119307341:+
Coord C1 exon
chr6:119300328-119300425
Coord A exon
chr6:119302026-119302119
Coord C2 exon
chr6:119307246-119307341
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGACTTTACCCTCAGGTG
3' ss Score
9.76
5' ss Seq
TGAGTACGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
GATCTACTGTATCACAGATATCGACCCGGACCACCGGAAACTCAGCCAACTGGAAGCTGTGGTTCGTTTCCTGACAGGGGTGGATCCAGACCTGGAGT
Seq A exon
GTGACGAGGAACTGGTGCGGGAGGTGCTGTTTGATGCGGTGGTAACCGCCCCCATGGAAGCCTATTGGACAGCACTGGCACTCAACATCTCTGA
Seq C2 exon
AGAGTCAGAGCCTGGCGTGGATGTGGCCTTCCTGGGAACCCGGGCTGGCCTTCTAAGAAGAAGCTTGTTCGTAGGCTCCGAGAAAGTCTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041460-'38-60,'38-55,40-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGATATCGACCCGGACC
R:
CGGAGCCTACGAACAAGCTTC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types