DreEX6004792 @ danRer10
Exon Skipping
Gene
ENSDARG00000022532 | chrnb1l
Description
cholinergic receptor, nicotinic, beta 1 (muscle) like [Source:ZFIN;Acc:ZDB-GENE-060811-1]
Coordinates
chr7:22315643-22318913:+
Coord C1 exon
chr7:22315643-22315685
Coord A exon
chr7:22318365-22318498
Coord C2 exon
chr7:22318869-22318913
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTGCGTGTGCGTGTGTTCAGAGG
3' ss Score
6.07
5' ss Seq
TTGGTATGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ATGGTGTGGCTAAATATCAACTACGATATAAACGGCTCTAGGA
Seq A exon
AGGCATCTGAGGCCGAACGGAGGCTACTGGAGGATTTGTTTCAGGATTATAACCTGAAAGTGCGTCCAGCACGTACCTGGAATGAGCGAGTGATGGTCCGAGTGGGAATGACTTTAGTCCAGCTCATCAGCTTG
Seq C2 exon
AACCAGAAGAACGGAGAGATGACAACAAACGTGTTCATGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022532-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.5=86.7)
C2:
PF0293118=Neur_chan_LBD=FE(6.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTGGCTAAATATCAACTACGA
R:
TCATGAACACGTTTGTTGTCATCT
Band lengths:
82-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]