RnoEX6048091 @ rn6
Exon Skipping
Gene
ENSRNOG00000014698 | Chrnb1
Description
cholinergic receptor nicotinic beta 1 subunit [Source:RGD Symbol;Acc:2349]
Coordinates
chr10:56402250-56403188:-
Coord C1 exon
chr10:56403061-56403188
Coord A exon
chr10:56402834-56402973
Coord C2 exon
chr10:56402250-56402294
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTAGTGCTTTCCTTCATTAGGAG
3' ss Score
6.87
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CGTCACTTCCCCTGGCCTGGCGGCCTCGGCCGCTCTTCGGACAAACCCACTGAGCGAAATCGGCAGGGCCATGGCCTTAGGGGCGCTGCTTCTGATTCTGGGGATACTCGGGACGCCCCTCGCCCCAG
Seq A exon
GAGCCCGCGGGTCGGAAGCCGAAGGCCAACTGCTTAAGAAACTTTTCTCGGATTATGATAGCTCAGTAAGGCCGGCGCAGGAGGTGGGAGACCGCGTCGGGGTCAGCATCGGCCTCACCCTGGCGCAACTCATCAGCCTG
Seq C2 exon
AACGAGAAGGATGAAGAAATGAGCACAAAGGTGTACTTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014698-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(17.8=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTTCCCCTGGCCTGG
R:
GGTCTAAGTACACCTTTGTGCTCA
Band lengths:
170-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]