MmuEX0011383 @ mm9
Exon Skipping
Gene
ENSMUSG00000041189 | Chrnb1
Description
cholinergic receptor, nicotinic, beta polypeptide 1 (muscle) [Source:MGI Symbol;Acc:MGI:87890]
Coordinates
chr11:69608471-69609445:-
Coord C1 exon
chr11:69609324-69609445
Coord A exon
chr11:69609097-69609236
Coord C2 exon
chr11:69608471-69608515
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTAGTGCTTTCCTTCGTCAGGCG
3' ss Score
5.37
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CGTCACTTCCCCTGGCCTGAGGCCGCTATCCGGACAAACTTCACTGAGCGAAAGAGGCAGGGCCATGGCCTTAGGGGCGCTGCTTCTGCTTCTAGGGGTACTCGGGACGCCCCTCGCCCCAG
Seq A exon
GCGCCCGCGGGTCGGAAGCCGAAGGCCAACTGATTAAGAAACTTTTCTCCAACTATGATAGCTCGGTGAGGCCGGCGCGGGAGGTGGGAGACCGCGTCGGGGTCAGCATCGGCCTCACCCTGGCGCAACTCATCAGCCTG
Seq C2 exon
AACGAGAAGGATGAAGAAATGAGCACAAAGGTGTACTTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041189_MULTIEX2-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(17.8=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTCCCCTGGCCTGAG
R:
GGTCTAAGTACACCTTTGTGCTCA
Band lengths:
163-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: