DreEX6006482 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38844901-38851896:+
Coord C1 exon
chr7:38844901-38844941
Coord A exon
chr7:38845050-38845243
Coord C2 exon
chr7:38851795-38851896
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTCTCTGTTCTCAGGAG
3' ss Score
10.44
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
CTACAACTGCTGATCGATTCTACAGGATTGATCGAGCTCAA
Seq A exon
GAGCATCTCAACTACGTGACTGAAATTTCTCAGGATGAGCTGTTTGTTTTGGACCCAGAGCTGGTGGTCACAGAGACTGTTAGCACATCACCTGGCATGCCAGACCTGGTGGACTCTGGTGAAGTCCAGTCCGATCCACACAAATTTGCCTTTCCGTCATCCTCTTCTTCACCACCAAACACACCTGGACCTAG
Seq C2 exon
GGTTGCAGAGCTGCAAAGGAAGCGTGTTTCCAGTGACAGTTCGGTGGCAGAAGCACTTGCACACAGTGACTCGCTCAGATCAGCCAAGCCAGCTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439-'34-36,'34-34,35-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.600 C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF054077=Peptidase_C27=PU(17.3=37.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTGCTGATCGATTCTACAGG
R:
CAGAGAGCTGGCTTGGCTGAT
Band lengths:
138-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]