DreEX6006543 @ danRer10
Exon Skipping
Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39202639-39203915:-
Coord C1 exon
chr7:39203811-39203915
Coord A exon
chr7:39203463-39203564
Coord C2 exon
chr7:39202639-39202737
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCAATTTTTTTTTGTGTTAGTGT
3' ss Score
6.36
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGTGTGATCCTGATCAGTGTGTCCTGGATATTCCTGTGTGTCGAGAAGATCAGACACTAATTGCCACTCGTGCTGACGGCAGCTGCTGTTTGGCACACATCTGCA
Seq A exon
TGTGTGACAAATGCCCAGAGGCAGTTCCAGTGTGTCAAGATGGAGAACTGCTGATTGTGGATACCAACAGCACAGAGCGCTGCTGTCCAGCTTATCACTGCT
Seq C2 exon
TGTGTGAGGCCTCCCGGTGTTTAGACATCACATGTCCAGTTGGCATGGCTGTAGTTTCCGCAAGAGATCCAGAAGAGTGTTGCCCATTGCAGACATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGATCAGTGTGTCCTGGA
R:
GCAATGGGCAACACTCTTCTG
Band lengths:
188-290
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]