GgaEX1041525 @ galGal4
Exon Skipping
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11462427-11464218:+
Coord C1 exon
chr5:11462427-11462537
Coord A exon
chr5:11463798-11463899
Coord C2 exon
chr5:11464155-11464218
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTAATTGTTTTTTTTTCTAGCAT
3' ss Score
7.94
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
AATGTGATCCAGCAAAATGTGAACCAATGGAACACATGCCAAGCTGTCAAGAGGACCAAACACTTATTGCTACTCGGGTGGAGAGTACATGCTGCATATCCTATATATGTG
Seq A exon
CATGTGGGGCTTGCTCTGATCAAATACCCAAATGTCAAGAAGGAGAAGTTCTTATTGTGGATGACAATACTACAGAAAGGTGTTGCCCTACCTACCAGTGTA
Seq C2 exon
GATAGCTGTGCTCCACACTACTATGACCTGATGGCTAACACATTTCAATCATCAGTTTATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'60-59,'60-58,61-59
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000010023fB10210
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCCAGCAAAATGTGAACCA
R:
ACTGATGATTGAAATGTGTTAGCCA
Band lengths:
164-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]