MmuEX0033299 @ mm9
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53556755-53558607:+
Coord C1 exon
chr7:53556755-53556862
Coord A exon
chr7:53558191-53558292
Coord C2 exon
chr7:53558509-53558607
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGACCCTTCTGTCCCCACAGGCT
3' ss Score
12.7
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGTGTGACCCTGGTCTGTGTGAGGCTGAGCAGGTCCCCACCTGTCGTGAGGACCAGATCTTGATCGAGGGCCGCCTAGGAGACTCCTGCTGCACCTCCTACTTCTGTG
Seq A exon
GCTGTGGTGAGTGTTCAGATCCCATGCCTGAGTGTCAGGAAGGAGAGGCACTCACTGTGCACAGGAACACCACAGAGCTCTGCTGCCCTCTGTATCAGTGTG
Seq C2 exon
TGTGTGAGAACTTCCGCTGCCCACAGGTACAGTGTGGCATGGGCACTTCCCTGGTGGAGGTGTGGAGCCCAGACCGATGCTGCCCCTACAAGTCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'47-48,'47-47,48-48
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACCCTGGTCTGTGTGAG
R:
AGGACTTGTAGGGGCAGCATC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: