HsaEX6001062 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17656627-17660096:+
Coord C1 exon
chr11:17656627-17656734
Coord A exon
chr11:17657157-17657258
Coord C2 exon
chr11:17659998-17660096
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTGACCCTCTTCCCCCTCAGCCT
3' ss Score
8.6
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGTGTGACCCAGATCTCTGTGAGGCAGAGCTGGTCCCCAGCTGCCGACAGGACCAGATCCTGATCACGGGCCGCCTGGGGGACTCCTGCTGCACCTCCTACTTCTGCG
Seq A exon
CCTGTGGTGACTGTCCAGACTCCATCCCCGAATGTCAAGAAGGGGAGGCGCTCACTGTGCACAGGAATACCACGGAACTCTGCTGCCCTCTGTACCAGTGTG
Seq C2 exon
TGTGTGAGAACTTCCGCTGTCCCCAAGTGCAGTGTGGCCTGGGCACTGCCCTGGTGGAGGTGTGGAGCCCCGACCGCTGCTGCCCCTACAAATCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'48-53,'48-52,49-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGATCTCTGTGAGGCA
R:
CACAGGATTTGTAGGGGCAGC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)