BtaEX6058921 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35421836-35425899:-
Coord C1 exon
chr15:35425792-35425899
Coord A exon
chr15:35424801-35424902
Coord C2 exon
chr15:35421836-35421934
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGGCCCGTCTCTCCCCTCAGCCT
3' ss Score
8.92
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AGTGTGACCCGGACCTGTGCGAGGCAGTGCAGGTCCCCAGCTGCCGCCAGGACCAGATCCTGATCACAGGCCGCCTGGGGGACTCATGTTGCATCTCCTACCTCTGTG
Seq A exon
CCTGTGGAGACTGTCCGGACCCCATCCCCGAGTGTCAGGAAGGGGAGGCGCTCACTGTGGACAGGAACACCACGGAGCTCTGCTGTCCTCTGTACCAGTGCG
Seq C2 exon
TGTGCGAGAGCTTCCGCTGCGCCCACGTGCAGTGTGGCATGGGCACAGCCCTGGTGGAGGTGTGGAGCCCAGAGCGCTGCTGCCCCTACAAGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'51-50,'51-49,52-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGACCCGGACCTGTG
R:
AGGACTTGTAGGGGCAGCAG
Band lengths:
204-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]