GgaEX1041525 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:13171611-13173620:+
Coord C1 exon
chr5:13171611-13171721
Coord A exon
chr5:13172982-13173083
Coord C2 exon
chr5:13173522-13173620
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTAATTGTTTTTTTTTCTAGCAT
3' ss Score
7.94
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
AATGTGATCCAGCAAAATGTGAACCAATGGAACACATGCCAAGCTGTCAAGAGGACCAAACACTTATTGCTACTCGGGTGGAGAGTACATGCTGCATATCCTATATATGTG
Seq A exon
CATGTGGGGCTTGCTCTGATCAAATACCCAAATGTCAAGAAGGAGAAGTTCTTATTGTGGATGACAATACTACAGAAAGGTGTTGCCCTACCTACCAGTGTA
Seq C2 exon
TTTGTGAAATACACCGTTGTCCTGAATTCAAATGCATGCTAGGCATGTCTTTGGTGGAGGTATGGAGCCCAGAGAAGTGCTGCCCCTTTCGGACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208-'58-61,'58-59,59-61=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGATCCAGCAAAATGTGAACC
R:
CGAAAGGGGCAGCACTTCTC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]