RnoEX6002846 @ rn6
Exon Skipping
Gene
ENSRNOG00000010983 | Otog
Description
otogelin [Source:RGD Symbol;Acc:1306610]
Coordinates
chr1:102317637-102319290:+
Coord C1 exon
chr1:102317637-102317744
Coord A exon
chr1:102318901-102319002
Coord C2 exon
chr1:102319192-102319290
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGACCCTTCTGTCCCCACAGGCT
3' ss Score
12.7
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
AGTGTGACCCTGGTCTGTGTGAGGCTGAGCAGGTCCCCACCTGTCGCCAGGACCAGGTCTTGATCGAGGGTCGCCTAGGAGACTCCTGCTGTCCCTCCTACTTCTGTG
Seq A exon
GCTGTGGTGAGTGTCCAGATGCCATGCCTGAGTGTCAGGAAGGAGAGGTGCTCACTGTGCACAGGAATAGCACGGAGCTCTGCTGCCCTCTGTATCAGTGCG
Seq C2 exon
TGTGTGAGAGCTTCCGCTGCCCACAGATACAGTGTGGCATGGGCACTTCCCTGGTGGAGGTGTGGAGCCCAGATCGCTGCTGCCCCTACAAGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010983-'51-50,'51-49,52-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACCCTGGTCTGTGTGAG
R:
AGGACTTGTAGGGGCAGCAG
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]