DreEX6008995 @ danRer10
Exon Skipping
Gene
ENSDARG00000103899 | rabepk
Description
Rab9 effector protein with kelch motifs [Source:ZFIN;Acc:ZDB-GENE-040704-52]
Coordinates
chr5:2452539-2460591:-
Coord C1 exon
chr5:2460442-2460591
Coord A exon
chr5:2453735-2453884
Coord C2 exon
chr5:2452539-2452937
Length
150 bp
Sequences
Splice sites
3' ss Seq
CATTGTCTTTTCTTCTCCAGAGT
3' ss Score
10.12
5' ss Seq
GCGGTACGA
5' ss Score
8
Exon sequences
Seq C1 exon
TCAGTGTGACGTGGACGCAGCCGGACACCACAGGGACTCCTCCAGCTCAGAGACACGGACATGTGATCACAGCCGTGGGTTCAGACATTTACATACACGGAGGAATGAGCGGAGAGAAGTTTCACAGCGACATGTTCACACTGAACACAG
Seq A exon
AGTCTCTGAAATGGCAGAAGGTGAAGGCTAAAGGTGATCTCCCACCCGGAGTCGCAGCTCATTCATCTGTAACATTCAACAAAAACATCTTCATCTTTGGAGGAATGACGGCAGACGGAGCCACAAACTCCATGTTTAAGTTTCAATGCG
Seq C2 exon
ATAAACAGCGCTGGACTCTGCTGAAGTTTGAGGGGGATCTTCCTCCGGGTCGGCTGGATCACTCCATGTGTTTACTGCCGTGGAGAGTAAAGATGGAGGACAGCGAACATGCAGACGTTCAGCATCTGTGCTTTGTCTTTGGAGGAATGGACACTCAGGGCGTCATATTCAACGACTGCCTTGTTACTGTGCTGACGTGACCAGTGTGCTTTAATATTCAATAAATAAATCCTCAAACCGCTTCATTTCATGTCCACAGGCCTCCCGCTCTAAACTAGATGTCAGATTCCCTCATTTTCCCTGATGACTATAAAGCTGAATTTCCAGAAGTGGATCCCAAATCGCATACTTATTACCCATTTTGTAGTATAAGCAGTGCATTTACATATTTAGTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103899-'8-9,'8-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134181=Kelch_4=PD(27.8=29.4),PF134181=Kelch_4=PU(67.3=64.7)
A:
PF134181=Kelch_4=PD(30.6=29.4),PF134151=Kelch_3=PU(48.0=47.1)
C2:
PF134151=Kelch_3=PD(50.0=37.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACACGGAGGAATGAGCGGA
R:
AGCACAGTAACAAGGCAGTCG
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]