RnoEX0073381 @ rn6
Exon Skipping
Gene
ENSRNOG00000018591 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:RGD Symbol;Acc:1310612]
Coordinates
chr3:13845361-13850895:-
Coord C1 exon
chr3:13850746-13850895
Coord A exon
chr3:13847032-13847181
Coord C2 exon
chr3:13845361-13845676
Length
150 bp
Sequences
Splice sites
3' ss Seq
GCAAAACTCTCTCGTGACAGGTG
3' ss Score
7.37
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACACTCTGACGTGGGCTCAGCCAGAGACGCATGGAAGTCCTCCATCTCCCCGGCACGGCCACGCGATGGTGGCAGCAGGGACAAAACTCTTCATCCATGGAGGACTGGCAGGGGACAGGTTCTTTGATGATCTCCACTGCATTGATATTG
Seq A exon
GTGACATGAGCTGGCAGAAGCTTGGTCCCACCGGTACTGCCCCAGTAGGCTGTGCTGCCCATGCCGCCGTGGCTGTGGGACACCATGTGTATGTGTTTGGAGGAATGACTGCCACTGGAGCACTGAACACAATGTACAAGTACCACACAG
Seq C2 exon
AAAAGCAGCACTGGACCATACTTCAGTTTGACACTTCCCTCCCCCCTGGACGCCTGGACCACTCCATGTGTGTCATCCCATGGCCAGTGATGTCTGCCTCTGACACTGAAGACTCAGGTTCTGTCATTCTCAGCCTCCAAGATGAGAAAGGGGACGCTGCTGAGAAACCAGAGACCCGGAGTGGAGGGTCCCGTGAGGAGAGTCCGACCACACTGCTGCTCTGTTTTGTGTTCGGTGGGATGAATACAGAAGGGGAGATCTATGATGATTGTCTCGTGACCGTAGTGGACTAATAAAACCCACATTTTTATCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018591-'22-23,'22-19,27-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=0.000 C2=0.247
Domain overlap (PFAM):
C1:
PF134151=Kelch_3=PD(47.2=49.0)
A:
PF0134420=Kelch_1=PU(77.3=66.7)
C2:
PF0134420=Kelch_1=PD(20.5=9.2)
Main Skipping Isoform:
ENSRNOT00000025194fB12022
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCAGGGACAAAACTCTT
R:
CGGGTCTCTGGTTTCTCAGCA
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]