GgaEX1047818 @ galGal3
Exon Skipping
Gene
ENSGALG00000001002 | RABEPK
Description
NA
Coordinates
chr17:10311947-10312911:+
Coord C1 exon
chr17:10311947-10312096
Coord A exon
chr17:10312215-10312364
Coord C2 exon
chr17:10312616-10312911
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTTTGTCCAACAGCCG
3' ss Score
9.9
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
TTGCTTTGGCATGGACCCAGCCTGACACCCATGGTGATCCGCCTTCTCCTCGGCATGGACATGTTGTAGTTGCAGTTGGGACCAAGCTTTTCATACATGGAGGTTTAGCTGGTGATATTTTTTACAATGACCTGTTCTGCATTGATACAA
Seq A exon
CCGACATGAAGTGGGTTAAGATAGCAGCCACTGGTGATGTGCCAGGAGGACGGGCATCCCACTCATCGGCTGTGTTTAAAGACCACTTATACATTTTTGGTGGAATAGGTCCAGATGGGACACTAGATACTACGTACAAGTATCATATAG
Seq C2 exon
AGGAGCAGCAGTGGACACTCCTGCAGTTTGATTCTCCTCTGCCTGCTGGGAGACTGGACCATGCCATGTGTGTCATTCCCTGGCGGGTTGGCAAAAATGGTGACGCAGCAGCTGTCTCTAAGGAAGATAAAGCTGAGCCAACTGCATCAGCTGGTGACAGAGCTGACCACCTCTGCAGAGGCCAGGATAAGAAGGCGTGTACTGAAGACACAATGATGCATCTGCTGTTAATATTTGGTGGGATGGATACACAAGCAGAGATATATAGGGACTGCATTGTAAGTTTGATTGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001002-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.184
Domain overlap (PFAM):
C1:
PF134151=Kelch_3=PD(47.2=49.0),PF134151=Kelch_3=PU(48.0=47.1)
A:
PF134151=Kelch_3=PD(50.0=49.0),PF134151=Kelch_3=PU(48.0=47.1)
C2:
PF134151=Kelch_3=PD(50.0=25.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTGGGACCAAGCTTTT
R:
CTCTGTCACCAGCTGATGCAG
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]