MmuEX0038418 @ mm10
Exon Skipping
Gene
ENSMUSG00000070953 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Coordinates
chr2:34777556-34784695:-
Coord C1 exon
chr2:34784546-34784695
Coord A exon
chr2:34780597-34780746
Coord C2 exon
chr2:34777556-34779529
Length
150 bp
Sequences
Splice sites
3' ss Seq
AAAACTCTCTCTTGTGACAGGTG
3' ss Score
9.09
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACACTCTGACATGGTCTCAACCGGAGACACATGGAAGTCCTCCGTCTCCTCGGCATGGCCATGTGATGGTGGCAGCGGGCACAAAACTCTTCATCCACGGAGGATTGGCAGGGGACAAGTTCTTTGATGATCTCCATTGCATTGATATAG
Seq A exon
GTGACATGAGCTGGCAGAAGCTTGGTCCCACCGGGGCTGTTCCAGTCGGCTGTGCTGCCCATGCCGCCGTTGCTGTGGGACACCATGTATATATGTTTGGAGGTATGACAGCCACTGGAGCACTGAACATGATGTACAAGTATCACACAG
Seq C2 exon
AAAAGCAGCACTGGACTGTACTTCAGTTTGACACTTCCCTACCCGCTGGACGACTGGACCACTCCATGTGTGTCATCCCATGGCCAGTGATGTCTACCTCTGAGAATAAAGACTCAGATTCTGTCATTCTAACCCTCCAAGATGAGAAAGGGGACGCTGCTGAGAAAGCAGAGACCCAGAGTGGAGGACCACACGAGGAGAGTCCAACTACTGTGTTGCTCTGCTTTGTGTTCGGTGGGATGAACACAGAAGGGGAGGTTTATGACGACTGTCTCGTAACTGTAGTGGACTAATAAAGCCCACATTTGTATTACTTGTGACTTTTTACAAAAGTGAAAACTCTGCCGAGCTACACTGCCAAATACTTTTTGCACAATATATTCTCTCATCCCAGTGCGGTGGTGCACACCAGGCATAGTAGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCCAGCCTGGTCTACGTGGTGAGTTCCAGGACAGCCAGAGCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070953-'19-19,'19-15,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=0.000 C2=0.258
Domain overlap (PFAM):
C1:
PF134181=Kelch_4=PD(27.8=29.4),PF134181=Kelch_4=PU(68.0=66.7)
A:
PF134181=Kelch_4=PD(30.0=29.4),PF0134420=Kelch_1=PU(79.1=66.7)
C2:
PF0134420=Kelch_1=PD(18.6=8.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGGGGACAAGTTCTTTG
R:
TTGGACTCTCCTCGTGTGGTC
Band lengths:
252-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types