HsaEX6063025 @ hg38
Exon Skipping
Gene
ENSG00000136933 | RABEPK
Description
Rab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:HGNC:16896]
Coordinates
chr9:125227910-125234158:+
Coord C1 exon
chr9:125227910-125228059
Coord A exon
chr9:125232596-125232745
Coord C2 exon
chr9:125233688-125234158
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTTTCTCTTGGCAGGTG
3' ss Score
12.76
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACACTCTGACCTGGTCACAGCCAGAGACACTTGGAAATCCTCCATCTCCCCGGCATGGTCATGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCACGGAGGCTTGGCGGGGGACAGATTCTATGATGACCTCCACTGCATTGATATAA
Seq A exon
GTGACATGAAATGGCAGAAGCTAAATCCCACTGGGGCTGCTCCAGCAGGCTGTGCTGCCCACTCAGCTGTGGCCATGGGAAAACATGTGTACATCTTTGGTGGAATGACTCCTGCAGGAGCACTGGACACAATGTACCAGTATCACACAG
Seq C2 exon
AAGAGCAGCATTGGACCTTGCTTAAATTTGATACTCTTCTACCCCCTGGACGATTGGACCATTCCATGTGTATCATTCCATGGCCAGTGACGTGTGCTTCTGAGAAAGAAGATTCCAACTCTCTCACTCTGAACCATGAAGCTGAGAAAGAGGATTCAGCTGACAAAGTAATGAGCCACAGTGGTGACTCACATGAGGAAAGCCAGACTGCTACACTGCTCTGTTTGGTGTTTGGTGGGATGAATACAGAAGGGGAAATCTATGACGATTGTATTGTGACTGTAGTGGACTAATAAAACCCACATTTTTATTACCTGTCAGTTACTTTCAGAATAGTTAAGTAAAACATTAGCTGTTTTATACCTCCAAAATATCTTCTGCATTATATATCTGTTTTTCTCCTACTTTGGTAGGTGAAGAAACTAATGCAAATAATTCTTATGTGCACTAAACCTTGCTATATTGCCTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136933-'28-32,'28-28,30-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.039 C2=0.268
Domain overlap (PFAM):
C1:
PF134181=Kelch_4=PD(27.8=29.4),PF134181=Kelch_4=PU(68.0=66.7)
A:
PF134181=Kelch_4=PD(30.0=29.4),PF0134420=Kelch_1=PU(79.1=66.7)
C2:
PF0134420=Kelch_1=PD(18.6=8.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACAGCCAGAGACACTTG
R:
CTCAGAAGCACACGTCACTGG
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains