DreEX6011065 @ danRer10
Exon Skipping
Gene
ENSDARG00000002771 | SLC4A5 (1 of 2)
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr5:27462321-27465941:-
Coord C1 exon
chr5:27465780-27465941
Coord A exon
chr5:27464140-27464318
Coord C2 exon
chr5:27462321-27462393
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGTTTTTACAGAAA
3' ss Score
11.14
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CCCACACGTCCTGACCGAGGATGGTTTGTGATGCCATTTGGAAAGAATCCATGGTGGGTTTACCTGGCAAGCTTCGTCCCTGCTCTCCTCGTCACCATCCTTATCTTCATGGATCAGCAGATCAGCGCTGTTATCGTCAACCGGAAGGAAAACAAGTTAAAG
Seq A exon
AAAGGCTGTGGGTATCATCTGGATCTATTGTGGGTTGGCGTTCTGATGGCAGCCTGCTCTTTTATGGGTCTGCCGTGGTATGTTGCGGCCACTGTCATTTCCATCGCTCACATTGATTCACTGAAGATGGAGAGCGAGTCTAGTGCTCCAGGGGAACAGCCACAGTTCTTGGGTGTGAG
Seq C2 exon
GGAACAAAGACTGACAGGAATCCTGGTCTTTGTGCTGACAGGAGTGTCTATTTTCTTGGCCCCGATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002771-'22-26,'22-25,23-26=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACGTCCTGACCGAGG
R:
CTGCAGGATCGGGGCCAA
Band lengths:
234-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]