RnoEX6014026 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114985336-114987869:+
Coord C1 exon
chr4:114985336-114985497
Coord A exon
chr4:114986200-114986378
Coord C2 exon
chr4:114987797-114987869
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCACTGTCCTACAGAAG
3' ss Score
9.01
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CCCACAAGGCCTGACCGAGGCTGGTTCGTTGCCCCCTTTGGGAAGAATCCTTGGTGGGTGTACCCTGCCAGCATCCTGCCGGCCCTGCTGGTGACCATCCTGATCTTCATGGACCAGCAGATCACTGCTGTCATTGTCAACAGGAAGGAGAACAAGCTGAGG
Seq A exon
AAGGCCGCCGGCTACCATCTGGACCTGTTCTGGGTGGGCATCCTCATGGCCCTGTGCTCCTTCATGGGGCTCCCCTGGTATGTGGCTGCCACGGTCATCTCCATCGCTCACATCGACAGCCTCAAGATGGAGACGGAGACCAGTGCCCCAGGGGAACAGCCCCAGTTCCTGGGGGTCAG
Seq C2 exon
GGAGCAGAGAGTTACTGGAGTCATGGTCTTCATTCTGACAGGCATCTCCGTCTTCCTGGCTCCTATCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-'29-33,'29-32,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAAGGCCTGACCGAG
R:
TTCAGGATAGGAGCCAGGAAGA
Band lengths:
234-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]