BtaEX0033343 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10387159-10389633:+
Coord C1 exon
chr11:10387159-10387320
Coord A exon
chr11:10388119-10388297
Coord C2 exon
chr11:10389561-10389633
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCACTGCCTCTGCAGAAG
3' ss Score
8.86
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CCCACACGGCCTGACCGAGGCTGGTTCGTGGCCCCCTTTGGGAAGAACCCGTGGTGGGTGTACCTAGCGAGCATCCTGCCCGCCCTGCTGGTGACCATCCTGATCTTCATGGACCAGCAGATCACTGCCGTCATAGTCAACCGGAAGGAGAACAAGCTGAGG
Seq A exon
AAGGCGGCTGGCTACCATCTGGACCTGTTCTGGGTGGGCACCCTCATGGCTCTCTGCTCCTTCATGGGGCTCCCCTGGTACGTGGCTGCCACGGTCATCTCCATTGCCCACATCGACAGCCTCAAGATGGAGACAGAGACCAGCGCCCCTGGGGAGCAGCCCCAGTTCCTGGGGGTCAG
Seq C2 exon
GGAACAGAGAGTGACTGGCACCATCGTCTTCATCCTGACAGGGATCTCTGTCTTCCTGGCTCCTATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'25-21,'25-19,26-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(9.9=100)
A:
PF0095516=HCO3_cotransp=FE(11.0=100)
C2:
PF0095516=HCO3_cotransp=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGACCGAGGCTGGTTCG
R:
CTGCAGGATAGGAGCCAGGAA
Band lengths:
226-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development