MmuEX6005140 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83288290-83290846:+
Coord C1 exon
chr6:83288290-83288451
Coord A exon
chr6:83289147-83289325
Coord C2 exon
chr6:83290774-83290846
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCACTGTCCTGCAGAAG
3' ss Score
9.81
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CCCACAAGGCCCGACCGAGGCTGGTTCGTTGCCCCCTTTGGGAAGAACCCTTGGTGGGTGTACCCTGCCAGCATCCTGCCGGCCCTGCTGGTGACCATCCTGATCTTCATGGACCAGCAGATCACCGCAGTCATTGTCAACCGGAAGGAGAACAAGCTGAGG
Seq A exon
AAGGCCGCTGGCTACCATCTGGACCTGTTCTGGGTAGGCATCCTCATGGCTCTGTGCTCCTTCACCGGGCTCCCCTGGTACGTGGCTGCCACGGTCATCTCCATCGCCCACATCGACAGCCTCAAGATGGAGACGGAGACCAGTGCCCCGGGGGAACAGCCCCAGTTCCTGGGGGTCAG
Seq C2 exon
GGAGCAGAGAGTTACTGGAGTCATGGTCTTCATCCTGACAGGCATCTCCGTCTTCCTGGCTCCTATCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'27-42,'27-40,31-42=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAGGCCCGACCGAG
R:
CTTCAGGATAGGAGCCAGGAAGA
Band lengths:
234-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types