DreEX6011097 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27767401-27770227:+
Coord C1 exon
chr5:27767401-27767555
Coord A exon
chr5:27767650-27767804
Coord C2 exon
chr5:27770044-27770227
Length
155 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTCTTCTATAGTGG
3' ss Score
8.24
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTAACCTCTCTCTGGAAAAGAGCAAACGTAAGAAGCTGTTGGACTGGCTGCCTGATCAAGGTTGGGAGGATATTATACGCCTCATGGAACTCTTTCCTAATGAGTTTGGCACTTTAGCTGATGATATAGAGAAGAATCCTGAGGAATGGAAGAAT
Seq A exon
TGGTATGACTTGGATGCTCCAGAGCAGGCTTCCTTCCCCATGAAGTACAAAGAAAACCTCTCTCCCTTTCAGAAGCTTCTGCTCATCCGCTGCTTCAGGCTGGACCGAGTGTACCGTGCCGTCAGTGATTACGTCACGCTTACTATGGGAGAGAA
Seq C2 exon
ATACGTGCAGCCTCCTGTGATAAGCTTTGAAGCTATTTTTGACCAAAGCTCTCCAAACTCACCCATCGTGTTTATTCTGAGTCCAGGCTCAGAACCAGCCAGCGATCTGATGAAGTTGGCCAAACACTCAGGCTTTGGCGTCAACAGACTCAAATTTCTTGCCATGGGGCAGGGACAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'73-70,'73-69,74-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(6.6=90.4)
A:
PF0302810=Dynein_heavy=FE(7.2=100)
C2:
PF0302810=Dynein_heavy=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCTGTTGGACTGGCTG
R:
TGGCCAACTTCATCAGATCGC
Band lengths:
248-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]