GgaEX6013585 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4862544-4863798:-
Coord C1 exon
chr15:4863644-4863798
Coord A exon
chr15:4862897-4863051
Coord C2 exon
chr15:4862544-4862727
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCCCACCTTTTCTTGCCAGTGG
3' ss Score
7.87
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCAATATTTCCCTGGAGAAGAGTGCACGAAAGAAACCATATGCTTGGCTTCCAGATCAAGGCTGGGAAGACCTAATTCGCTTGTCTGAACTGTTTCCTCAGCAATTTGAATCTCTTCCAGATGATGTGGAAAAAAATCCAGATGTATGGAAAAAC
Seq A exon
TGGTATGACACAGATGCTCTGGAGCAGATGCCATTCCCCATGCAGTACCAAAACAGTCTCACAGACTTTCAGAAACTCCTACTTCTGCGCTGTTTCCGAGTGGACCGCGTGTATCGGGCAGTGACAGACTATGTGACACTGACAATGAGTGAGAA
Seq C2 exon
GTACGTGCAGCCCCCTGTGATCAGCTTTGAAGCCATCTTTGAGCAGAGCAGTCCTCGCTCACCGGTTGTTTTTATCTTAAGTCCCGGCTGTGATCCCATTAGTGACCTCATGAAACTGGCTGAGAGGACAGGCTTTGGAGGGGATAGACTCAAATTCCTAGCCATGGGACAAGGCCAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'80-90,'80-89,81-90=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(6.5=90.4)
A:
PF0302810=Dynein_heavy=FE(7.1=100)
C2:
PF0302810=Dynein_heavy=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGAAGACCTAATTCGC
R:
TATCCCCTCCAAAGCCTGTCC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]