HsaEX6069925 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124408825-124411367:+
Coord C1 exon
chr12:124408825-124408979
Coord A exon
chr12:124409597-124409751
Coord C2 exon
chr12:124411184-124411367
Length
155 bp
Sequences
Splice sites
3' ss Seq
ATATTCTTTGCTTTTCCCAGTGG
3' ss Score
7.4
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAACATTTCCCTGGAGAAAAGCAAAAGAAAAAAGCCCTGCGCTTGGTTGTCTGACCAAGGATGGGAAGATATCATTCTTTTATCAGAAATGTTTTCAGACAACTTTGGGCAACTTCCTGATGATGTTGAGAATAATCAGACTGTCTGGCAGGAG
Seq A exon
TGGTATGACCTGGATTCACTGGAGCAGTTTCCCGTCCCCTTGGGTTACGATAACAACATCACCCCTTTCCAGAAGTTGCTTATTTTGCGCTGTTTCCGTGTGGATCGGGTCTATCGGGCCGTGACTGACTATGTGACTGTAACAATGGGAGAGAA
Seq C2 exon
GTATGTGCAGCCCCCAATGATCAGCTTTGAAGCTATTTTTGAGCAGAGCACTCCACATTCGCCCATTGTGTTTATCCTGAGTCCTGGCTCCGACCCTGCCACTGATCTTATGAAATTAGCAGAGCGAAGTGGTTTTGGAGGAAATCGCCTCAAATTCCTTGCAATGGGTCAAGGTCAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'71-73,'71-71,72-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(6.6=90.4)
A:
PF0302810=Dynein_heavy=FE(7.2=100)
C2:
PF0302810=Dynein_heavy=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCTTGGTTGTCTGACC
R:
TCCAAAACCACTTCGCTCTGC
Band lengths:
257-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)