GgaEX6013585 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4909206-4910460:-
Coord C1 exon
chr15:4910306-4910460
Coord A exon
chr15:4909559-4909713
Coord C2 exon
chr15:4909206-4909389
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCCCACCTTTTCTTGCCAGTGG
3' ss Score
7.87
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCAATATTTCCCTGGAGAAGAGTGCACGAAAGAAACCATATGCTTGGCTTCCAGATCAAGGCTGGGAAGACCTAATTCGCTTGTCTGAACTGTTTCCTCAGCAATTTGAATCTCTTCCAGATGATGTGGAAAAAAATCCAGATGTATGGAAAAAC
Seq A exon
TGGTATGACACAGATGCTCTGGAGCAGATGCCATTCCCCATGCAGTACCAAAACAGTCTCACAGACTTTCAGAAACTCCTACTTCTGCGCTGTTTCCGAGTGGACCGCGTGTATCGGGCAGTGACAGACTATGTGACACTGACAATGAGTGAGAA
Seq C2 exon
GTACGTGCAGCCCCCTGTGATCAGCTTTGAAGCCATCTTTGAGCAGAGCAGTCCTCGCTCACCGGTTGTTTTTATCTTAAGTCCCGGCTGTGATCCCATTAGTGACCTCATGAAACTGGCTGAGAGGACAGGCTTTGGAGGGGATAGACTCAAATTCCTAGCCATGGGACAAGGCCAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'70-71,'70-70,71-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(10.9=90.4)
A:
PF0302810=Dynein_heavy=FE(11.8=100)
C2:
PF0302810=Dynein_heavy=FE(14.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGGAAGACCTAATTCGC
R:
TATCCCCTCCAAAGCCTGTCC
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]