MmuEX6021044 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125303668-125307420:+
Coord C1 exon
chr5:125303668-125303822
Coord A exon
chr5:125304804-125304958
Coord C2 exon
chr5:125307237-125307420
Length
155 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTTTGCTTCTCGCAGTGG
3' ss Score
7.76
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGAACATTTCTCTGGAGAAGAGCAAGTGGAAGAAACCATGCACCTGGCTGTCGGACCAGGGCTGGGAAGACATCATTCTCCTGTCACAAAAGTTTTCCGACATCTTTGGGAACCTTCCTCTTGATATTGAACATCATCTCCCCATGTGGCAGGAG
Seq A exon
TGGTACGACCAGGATTCACTCGAGCAGTTCCCGTTCCCCCTGGGCTACGATGATAACATCACTGCTTTCCAGAAACTGCTGATTTTACGCTGTTTCCGAGTAGACCGGGTGTACCGGGCGGTGACTGACTATGTGACCCTCACCATGGGAGAAAA
Seq C2 exon
GTATGTGCAGCCCCCGATGATCAGCTTCGAAGCCATTTTTGAGCAGAGCACCCCCAATTCGCCCATCGTGTTCATCCTGAGCCCTGGCTCTGACCCCGCCAGTGACCTCATGAAGCTGGCTGAGCGGAGTGGCTTCGGGGGCACGCGTCTCAAGTTTCTTGCAATGGGTCAAGGCCAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'67-70,'67-69,68-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(6.5=88.5)
A:
PF0302810=Dynein_heavy=FE(7.2=100)
C2:
PF0302810=Dynein_heavy=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAACCATGCACCTGGCT
R:
CTCAGCCAGCTTCATGAGGTC
Band lengths:
251-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: