DreEX6011737 @ danRer10
Exon Skipping
Gene
ENSDARG00000009745 | fbxw2
Description
F-box and WD repeat domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050522-303]
Coordinates
chr5:31783041-31783705:-
Coord C1 exon
chr5:31783511-31783705
Coord A exon
chr5:31783250-31783383
Coord C2 exon
chr5:31783041-31783127
Length
134 bp
Sequences
Splice sites
3' ss Seq
AAGATTGACTTTTGTTGCAGTGT
3' ss Score
4.59
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTTCTGATGACCTGTCAGCCAAACTATGGGATGTCCGCACAGGCCAGTGTGTCTATGGCATCCAGACCCACACCTGTGCCACTGTCAAATTTGATGAGCAGAAACTGGTGACTGGGTCTTTTGATAACACCATTGCATGTTGGGAATGGAGCACTGGTGCCAAAATCCAGCAGTTTCGAGGACATACTGGGGCAG
Seq A exon
TGTTCAGCATAGACTACAATGATGAGTTGGACACCCTGGTCAGCGGCTCTGCAGACTTCACTGTCAAAGTATGGTCCCTTTCTGCAGGAACGTGTGTCAACACTCTTACTGGACACACAGAGTGGGTCACTAAG
Seq C2 exon
GTGCACCTTCAGAAAAGCCAAGTGGAGTCCATGATGCACAGTCCTGGTGACTACATACTACTGAGTGTTGATAAATATGAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009745-'7-7,'7-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(28.6=15.2),PF0040027=WD40=WD(100=53.0),PF0040027=WD40=PU(33.3=19.7)
A:
PF0040027=WD40=PD(64.1=55.6)
C2:
PF0040027=WD40=FE(60.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGATGACCTGTCAGCCA
R:
CCAGGACTGTGCATCATGGAC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]